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Самый цитируемый биологический институт РФ *

Отдел фотосинтеза и флуоресцентных методов

Отдел организован в 1976 г.; его первым руководителем был проф. А.Ю. Борисов. С 1996 г. по настоящее время отдел возглавляет дфмн А.П. Разживин.

Основные направления исследований

Теоретическое и экспериментальное изучение первичных (физических) процессов фотосинтеза. Развитие и применение методов оптической спектроскопии (производная спектроскопия, флуоресцентная спектроскопия) для изучения биологических объектов.

Основные научные достижения отдела

Обнаружение пикосекундных процессов доставки энергии от массы светопоглощающего хлорофилла на реакционные центры у пурпурных и зеленых бактерий и фотосистемы I у растений [Borisov AY, Godik VI. Fluorescence lifetime of bacteriochlorophyll and reaction center photooxidation in purple bacterium. Biochim Biophys Acta. 1970; 221: 441-3; Borisov AY, Godik VI. Energy transfer in bacterial photosynthesis. I. Light intensity dependences of fluorescence lifetimes. Bioenergetics. 1972; 3: 211-20; Borisov AY, Il’ina MD. Fluorescence lifetime and energy migration mechanism in photosystem-1 of plants. Biochim Biophys Acta. 1973; 305: 364-73; Borisov AY, Fetisova ZG, Godik VI. Energy transfer in photoactive complexes obtained from green bacterium Ch. limicola. Biochim Biophys Acta. 1977; 461: 501-9]. Открытие сигнала минорной формы в хроматофорах пурпурных бактерий [Razjivin AP et al. The study of excitation transfer between light-harvesting antenna and reaction center in chromatophores from purple bacterium Rhodospirillum rubrum by selective picosecond spectroscopy. FEBS Lett. 1982; 143: 40-4; Borisov AY et al. Minor component B-905 of light-harvesting antenna in Rhodospirillum rubrum chromatophores and the mechanism of singlet-singlet annihilation as studied by difference selective picosecond spectroscopy. FEBS Lett. 1982; 138: 25-8; Данелюс РВ, Разживин АП. Взаимодействие светособирающей антенны с реакционным центром в бактериальном фотосинтезе по данным абсорбционной пикосекундной спектроскопии. Изв АН СССР, сер физ. 1984; 48: 466-71]. Разработка поляронного механизма конверсии энергии в фотосинтетических реакционных центрах [Fok MV, Borisov AY. Water and energy conversion in photosynthesis. Studia biophysica. 1981; 84: 115-24; Borisov AY. New concept of energy migration and trapping in purple bacteria. Biochem Mol Biol Int. 1995; 35: 833-40]. Разработка экситонной теории первичных процессов фотосинтеза (переноса и захвата возбуждений посредством возбуждений делокализованных по кольцевым агрегатам из молекул (бактерио)хлорофилла в светособирающей антенне фотосинтезирующих бактерий) [Novoderezhkin VI, Razjivin AP. Excitonic interactions in the light-harvesting antenna of photosynthetic purple bacteria and their influence on picosecond absorbance spectra. FEBS Lett. 1993; 330: 5-7; Novoderezhkin VI, Razjivin AP. Exciton dynamics in circular aggregates: Application to antenna of photosynthetic purple bacteria. Biophys J. 1995; 68: 1089-1100; Novoderezhkin VI, Razjivin AP. The theory of Forster-type migration between clusters of strongly interacting molecules: application to light-harvesting complexes of purple bacteria. Chem Physics. 1996; 211: 203-214; Dracheva TV, Novoderezhkin VI, Razjivin AP. Exciton delocalization in the light-harvesting LH2 complex of photosynthetic purple bacteria. Photochem Photobiol. 1997; 66: 141-6].

Участие в научно-исследовательских проектах и грантовая поддержка

Проекты "Взаимосвязь спектральных и структурных особенностей фотосинтетических антенн по данным экспериментальных и теоретических исследований" (РФФИ); "Перенос электронно-колебательных возбуждений в пигмент-белковых комплексах фотосинтеза: экспериментальное исследование методами нелинейной спектроскопии и теоретическое моделирование" (РФФИ); "Математическое моделирование переноса энергии при фотосинтезе (Российско-Голландский грант NWO-РФФИ). Гранты: ряд грантов РФФИ, Российско-голландский грант NOW-РФФИ, гранты INTAS, WTZ, Международного научного фонда Сороса, Междисциплинарные проекты МГУ (2002-2003, 2004-2005 гг).

Научные премии

Научные достижения отдела отмечены: премией МГУ им. Шувалова (В.И.Новодережкин), золотыми и бронзовыми медалями ВДНХ, премией Минвуза СССР.

Историю отдела фотосинтеза и его научных исследований можно найти в следующих публикациях: 1. Borisov AY. (2003) The beginning of research on biophysics of photosynthesis and initial contributions made by Russian scientists to its development. Photosynth Res. 2003; 76: 413-26; 2. Лазеры и фотосинтез. Итоги науки и техники. М., Изд. ВИНИТИ. Серия Биофизика. 1986. Т. 19, 243 с.

Все статьи
  1. Omarova E.O., Nazarov P.A., Firsov A.M., Strakhovskaya M.G., Arkhipova A.Y., Moisenovich M.M., Agapov I.I., Ol'shevskaya V.A., Zaitsev A.V., Kalinin V.N., Kotova E.A., Antonenko Y.N. (2015) Carboranyl-Chlorin e(6) as a Potent Antimicrobial Photosensitizer. PLoS One, 10 (11): . >>

  2. Gall A., Ilioaia C., Kruger T.P.J, Novoderezhkin V.I., Robert B., Van Grondelle R. (2015) Conformational Switching in a Light-Harvesting Protein as Followed by Single-Molecule Spectroscopy. Biophys. J., 108 (11): 2713-2720. >>

  3. Rokitskaya T.I., Firsov A.M., Kotova E.A., Antonenko Y.N. (2015) Photodynamic Inactivation of Gramicidin Channels in Bilayer Lipid Membranes: Protective Efficacy of Singlet Oxygen Quenchers Depends on Photosensitizer Location. Biochem.-Moscow, 80 (6): 745-751. >>

  4. Antonenko Y.N., Nechaeva N.L., Baksheeva V.E., Rokitskaya T.I., Plotnikov E.Y., Kotova E.A., Zorov D.B. (2015) Intramitochondrial accumulation of cationic Atto520-biotin proceeds via voltage-dependent slow permeation through lipid membrane. Biochim. Biophys. Acta-Biomembr., 1848 (6): 1277-1284. >>

  5. Firsov A.M., Kotova E.A., Korepanova E.A., Osipov A.N., Antonenko Y.N. (2015) Peroxidative permeabilization of liposomes induced by cytochrome c/cardiolipin complex. Biochim. Biophys. Acta-Biomembr., 1848 (3): 767-774. >>

  6. Romero E., Augulis R., Novoderezhkin V.I., Ferretti M., Thieme J., Zigmantas D., Van Grondelle R. (2014) Quantum coherence in photosynthesis for efficient solar-energy conversion. Nat. Phys., 10 (9): 677-683. >>

  7. Denisov S.S., Kotova E.A., Khailova L.S., Korshunova G.A., Antonenko Y.N. (2014) Tuning the hydrophobicity overcomes unfavorable deprotonation making octylamino-substituted 7-nitrobenz-2-oxa-1,3-diazole (n-octylamino-NBD) a protonophore and uncoupler of oxidative phosphorylation in mitochondria. Bioelectrochemistry, 98: 30-38. >>

  8. Rokitskaya T.I., Kotova E.A., Agapov I.I., Moisenovich M.M., Antonenko Y.N. (2014) Unsaturated lipids protect the integral membrane peptide gramicidin A from singlet oxygen. FEBS Lett., 588 (9): 1590-1595. >>

  9. Taisova A.S., Yakovlev A.G., Fetisova Z.G. (2014) Size variability of the unit building block of peripheral light-harvesting antennas as a strategy for effective functioning of antennas of variable size that is controlled in vivo by light intensity. Biochem.-Moscow, 79 (3): 251-259. >>

  10. Antonenko Y.N., Kotova E.A., Omarova E.O., Rokitskaya T.I., Ol'Shevskaya V.A., Kalinin V.N., Nikitina R.G., Osipchuk J.S., Kaplan M.A., Ramonova A.A., Moisenovich M.M., Agapov I.I., Kirpichnikov M.P. (2014) Photodynamic activity of the boronated chlorin e6 amide in artificial and cellular membranes. Biochim. Biophys. Acta-Biomembr., 1838 (3): 793-801. >>

  11. Shchepinova M.M., Denisov S.S., Kotova E.A., Khailova L.S., Knorre D.A., Korshunova G.A., Tashlitsky V.N., Severin F.F., Antonenko Y.N. (2014) Dodecyl and octyl esters of fluorescein as protonophores and uncouplers of oxidative phosphorylation in mitochondria at submicromolar concentrations. Biochim. Biophys. Acta-Bioenerg., 1837 (1): 149-158. >>

  12. Curutchet C., Novoderezhkin V.I., Kongsted J., Munoz-Losa A. Van Grondelle R., Scholes G.D., Mennucci B. (2013) Energy Flow in the Cryptophyte PE545 Antenna Is Directed by Bilin Pigment Conformation. J. Phys. Chem. B, 117 (16): 4263-4273. >>

  13. Antonenko Y.N., Khailova L.S., Knorre D.A., Markova O.V., Rokitskaya T.I., Ilyasova T.M., Severina I.I., Kotova E.A., Karavaeva Y.E., Prikhodko A.S., Severin F.F., Skulachev V.P. (2013) Penetrating Cations Enhance Uncoupling Activity of Anionic Protonophores in Mitochondria. PLoS One, 8 (4): . >>

  14. Sorochkina A.I., Plotnikov E.Y., Rokitskaya T.I., Kovalchuk S.I., Kotova E.A., Sychev S.V., Zorov D.B., Antonenko Y.N. (2012) N-Terminally Glutamate-Substituted Analogue of Gramicidin A as Protonophore and Selective Mitochondrial Uncoupler. PLoS One, 7 (7): . >>

  15. Taisova A.S., Lukashev E.P., Fedorova N.V., Zobova A.V., Dolgova T.A., Fetisova Z.G. (2012) Experimental Proof of Optimality of Interfacing of Chlorosome BChl c and Membrane BChl a Subantennae in Superantenna of Photosynthetic Green Bacteria from the Oscillochloridaceae Family. Dokl. Biochem. Biophys., 444 (1): 154-157. >>

  16. Rokitskaya T.I., Sorochkina A.I., Kovalchuk S.I., Egorova N.S., Kotova E.A., Sychev S.V., Antonenko Y.N. (2012) The pH-dependent induction of lipid membrane ionic permeability by N-terminally lysine-substituted analogs of gramicidin A. Eur. Biophys. J. Biophys. Lett., 41 (2): 129-138. >>

  17. Sytina O.A., Novoderezhkin V.I., Van Grondelle R., Groot M.L. (2011) Modeling of Multi-Exciton Transient Absorption Spectra of Protochlorophyllide Aggregates in Aqueous Solution. Journal of Physical Chemistry A, 115 (43): 11944-11951.

  18. Kotova E.A., Kuzevanov A.V., Pashkovskaya A.A., Antonenko Y.N. (2011) Selective permeabilization of lipid membranes by photodynamic action via formation of hydrophobic defects or pre-pores. Biochimica et Biophysica Acta-Biomembranes, 1808 (9): 2252-2257.

  19. Stuart T.A.C., Vengris M., Novoderezhkin V.I., Cogdell R.J., Hunter C.N., Van Grondelle R. (2011) Direct Visualization of Exciton Reequilibration in the LH1 and LH2 Complexes of Rhodobacter sphaeroides by Multipulse Spectroscopy. Biophysical Journal, 100 (9): 2226-2233.

  20. Perevoshchikova I.V., Kotova E.A., Antonenko Y.N. (2011) Fluorescence correlation spectroscopy in biology, chemistry, and medicine. Biochemistry-Moscow, 76 (5): 497-516.

  21. Novoderezhkin V.I., Stuart T.A.C., Van Grondelle R. (2011) Dynamics of Exciton Relaxation in LH2 Antenna Probed by Multipulse Nonlinear Spectroscopy. Journal of Physical Chemistry A, 115 (16): 3834-3844.

  22. Rokitskaya T.I., Kolodkin N.I., Kotova E.A., Antonenko Y.N. (2011) Indolicidin action on membrane permeability: Carrier mechanism versus pore formation. Biochimica et Biophysica Acta-Biomembranes, 1808 (1): 91-97.

  23. Zobova A., Taisova A.S., Lukashev E.P., Fedorova N., Baratova L., Fetisova Z.G. (2011) CsmA Protein is Associated with BChl a in the Baseplate Subantenna of Chlorosomes of the Photosynthetic Green Filamentous BacteriumOscillochloris trichoides belonging to the Family Oscillochloridaceae. Journal of Biophysics, 2011: 10. >>

  24. Rokitskaya T.I., Macrae M.X., Blake S., Egorova N.S., Kotova E.A., Yang J., Antonenko Y.N. (2010) Mechanistic insight into gramicidin-based detection of protein-ligand interactions via sensitized photoinactivation. Journal of Physics-Condensed Matter, 22 (45): -.

  25. Moisenovich M.M., ol'shevskaya V.A., Rokitskaya T.I., Ramonova A.A., Nikitina R.G., Savchenko A.N., Tatarskiy V.V., Kaplan M.A., Kalinin V.N., Kotova E.A., Uvarov O.V., Agapov I.I., Antonenko Y.N., Shtil A.A. (2010) Novel Photosensitizers Trigger Rapid Death of Malignant Human Cells and Rodent Tumor Transplants via Lipid Photodamage and Membrane Permeabilization. Plos One, 5 (9): -.

  26. Zobova A.V., Taisova A.S., Fetisova Z.G. (2010) Search for an optimal interfacing of subantennae in superantenna of photosynthetic green bacteria from Oscillochloridaceae family: Model calculations. Doklady Biochemistry and Biophysics, 433 (1): 148-151.

  27. Novoderezhkin V.I., Doust A.B., Curutchet C., Scholes G.D., Van Grondelle R. (2010) Excitation Dynamics in Phycoerythrin 545: Modeling of Steady-State Spectra and Transient Absorption with Modified Redfield Theory. Biophysical Journal, 99 (2): 344-352.

  28. Perevoshchikova I.V., Zorov S.D., Kotova E.A., Zorov D.B., Antonenko Y.N. (2010) Flux of fluorescently labeled ATP through mitochondrial outer membrane can be regulated by hexokinase binding. Biochimica et Biophysica Acta-Bioenergetics, 1797: 68.

  29. Kruger T.P.J., Novoderezhkin V.I., Ilioaia C., Van Grondelle R. (2010) Fluorescence Spectral Dynamics of Single LHCII Trimers. Biophysical Journal, 98 (12): 3093-3101.

  30. Perevoshchikova I.V., Zorov S.D., Kotova E.A., Zorov D.B., Antonenko Y.N. (2010) Hexokinase inhibits flux of fluorescently labeled ATP through mitochondrial outer membrane porin. FEBS Letters, 584 (11): 2397-2402.

  31. Sobko A.A., Kovalchuk S.I., Kotova E.A., Antonenko Y.N. (2010) Induction of lipid flip-flop by colicin E1-a hallmark of proteolipidic pore formation in liposome membranes. Biochemistry-Moscow, 75 (6): 728-733.

  32. Romero E., Van Stokkum I.H.M., Novoderezhkin V.I., Dekker J.P., Van Grondelle R. (2010) Two Different Charge Separation Pathways in Photosystem II. Biochemistry, 49 (20): 4300-4307.

  33. Van Grondelle R., Novoderezhkin V.I. (2010) PHOTOSYNTHESIS Quantum design for a light trap. Nature, 463 (7281): 614-615.

  34. Novoderezhkin V.I., Van Grondelle R. (2010) Physical origins and models of energy transfer in photosynthetic light-harvesting. Physical Chemistry Chemical Physics, 12 (27): 7352-7365.

  35. Strakhovskaya M.G., Antonenko Y.N., Pashkovskaya A.A., Kotova E.A., Kireev V., Zhukhovitsky V.G., Kuznetsova N.A., Yuzhakova O.A., Negrimovsky V.M., Rubin A.B. (2009) Electrostatic binding of substituted metal phthalocyanines to enterobacterial cells: Its role in photodynamic inactivation. Biochemistry-Moscow, 74 (12): 1305-1314.

  36. Pashkovskaya A.A., Perevoshchikova I.V., Maizlish V.E., Shaposhnikov G.P., Kotova E.A., Antonenko Y.N. (2009) Interaction of Tetrasubstituted Cationic Aluminum Phthalocyanine with Artificial and Natural Membranes. Biochemistry-Moscow, 74 (9): 1021-1026.

  37. Sobko A.A., Rokitskaya T.I., Kotova E.A. (2009) Histidine 440 controls the opening of colicin E1 channels in a lipid-dependent manner. Biochimica et Biophysica Acta-Biomembranes, 1788 (9): 1962-1966.

  38. Zobova A.V., Yakovlev A.G., Taisova A.S., Fetisova Z.G. (2009) The search for an optimal orientational ordering of Q (y) transition dipoles of subantenna molecules in the superantenna of photosynthetic green bacteria: Model calculations. Molecular Biology, 43 (3): 426-443.

  39. Kovalchuk S.I., Kotova E.A., Stoilova T.B., Sychev S.V., Egorova N.S., Surovoy A.Y., Antonenko Y.N., Ivanov V.T. (2009) Positively charged gramicidin A based peptides form two types of membrane channels. Peptides for Youth, 611: 565-566.

  40. Antonenko Y.N., Roginsky V.A., Pashkovskaya A.A., Rokitskaya T.I., Kotova E.A., Zaspa A.A., Chernyak B.V., Skulachev V.P. (2008) Protective effects of mitochondria-targeted antioxidant SkQ in aqueous and lipid membrane environments. Journal of Membrane Biology, 222 (3): 141-149.

  41. Novoderezhkin V.I., Rutkauskas D., Van Grondelle R. (2007) Multistate conformational model of a single LH2 complex: Quantitative picture of time-dependent spectral fluctuations. Chemical Physics, 341 (1): 45-56.

  42. Pashkovskaya A.A., Sokolenko E.A., Sokolov V.S., Kotova E.A., Antonenko Y.N. (2007) Photodynamic activity and binding of sulfonated metallophthalocyanines to phospholipid membranes: Contribution of metal-phosphate coordination. Biochimica et Biophysica Acta-Biomembranes, 1768 (10): 2459-2465.

  43. Stoilova T.B., Dutseva E.A., Pashkovskaya A.A., Sychev S.V., Koval'chuk S.V., Sobko A.A., Egorova N.S., Kotova E.A., Antonenko Y.N., Surovoi A.Y., Ivanov V.T. (2007) Ion channels of various types induced in lipid membranes by gramicidin a derivatives carrying a cationic sequence at their C-termini. Russian Journal of Bioorganic Chemistry, 33 (5): 474-481.

  44. Novoderezhkin V.I., Dekker J.P., Van Grondelle R. (2007) Mixing of exciton and charge-transfer states in Photosystem II reaction centers: Modeling of stark spectra with modified redfield theory. Biophysical Journal, 93 (4): 1293-1311.

  45. Dutseva E.A., Antonenko Y.N., Kotova E.A., Pfeifer J.R., Koert U. (2007) Sensitized photoinactivation of minigramicidin channels in bilayer lipid membranes. Biochimica et Biophysica Acta-Biomembranes, 1768 (5): 1230-1237.

  46. Kovalchuk S.I., Kotova E.A., Stoilova T.B., Sychev S.V., Egorova N.S., Surovoy A.Y., Antonenko Y.N., Ivanov V.T. (2007) Positively charged gramicidin A based peptides form two types of membrane channels. Biopolymers, 88 (4): 624.

  47. Novikov A.A., Taisova A.S., Fetisova Z.G. (2007) Analysis of spectral conjugation of nonuniform subantennae in the light-harvesting superantenna of Oscillochloridaceae photosynthetic green bacteria. Biofizika, 52 (1): 63-68.

  48. Sokolenko E.A., Pashkovskaya A.A., Kotova E.A., Sokolov V.S., Antonenko Y.N. (2007) Interaction of sulfonated metallophthalocyanines with bilayer lipid membranes: photochemical activity versus adsorption on the membrane surface. Biophysical Journal, : 239A-239A.

  49. Sobko A.A., Kotova E.A., Antonenko Y.N., Zakharov S.D., Cramer W.A. (2006) Lipid dependence of the channel properties of a colicin E1-lipid toroidal pore. Journal of Biological Chemistry, 281 (20): 14408-14416.

  50. Antonenko Y.N., Stoilova T.B., Kovalchuk S.I., Egorova N.S., Pashkovskaya A.A., Sobko A.A., Kotova E.A., Surovoy A.Y. (2006) Redox-regulated ion channel activity of a cysteine-containing gramicidin A analogue. Biochimica et Biophysica Acta-Biomembranes, 1758 (4): 493-498.

  51. Novoderezhkin V.I., Rutkauskas D., Van Grondelle R. (2006) Dynamics of the emission spectrum of a single LH2 complex: Interplay of slow and fast nuclear motions. Biophysical Journal, 90 (8): 2890-2902.

  52. Taisova A.S., Keppen O.I., Novikov A.A., Naumova M.G., Fetisova Z.G. (2006) Some factors controlling the biosynthesis of chlorosome antenna bacteriochlorophylls in green filamentous anoxygenic phototrophic bacteria of the family Oscillochlofidaceae. Microbiology, 75 (2): 129-135.

  53. Van Grondelle R., Novoderezhkin V.I. (2006) Energy transfer in photosynthesis: experimental insights and quantitative models. Physical Chemistry Chemical Physics, 8 (7): 793-807.

  54. Dutseva E.A., Kotova E.A., Pfeifer J.R., Koert U., Antonenko Y.N. (2006) Ion channels formed by mini-gramicidin in planar bilayer phospholipid membranes: Sensitized photoinactivation versus single-channel analysis. Biochimica et Biophysica Acta-Bioenergetics, : 365.

  55. Pashkovskaya A.A., Kotova E.A., Chernyak B.V., Antonenko Y.N. (2006) Mitochondria-targeted antioxidant MitoQ protects gramicidin channels from photodynamic inactivation in planar phospholipid bilayers. Biochimica et Biophysica Acta-Bioenergetics, : 431.

  56. Sarkisov O.M., Gostev F.E., Shelaev I.V., Novoderezhkin V.I., Gopta O.A., Mamedov M.D., Semenov A.Y., Nadtochenko V.A. (2006) Long-lived coherent oscillations of the femtosecond transients in cyanobacterial photosystem I. Physical Chemistry Chemical Physics, 8 (48): 5671-5678.

  57. Sobko A.A., Kotova E.A., Mueller P., Antonenko Y.N., Zakharov S.D., Cramer W.A. (2006) Colicin E1 ionic channels and lipid flip-flop. Biochimica et Biophysica Acta-Bioenergetics, : 393.

  58. Sobko A.A., Kotova E.A., Zakharov S.D., Cramer W.A., Antonenko Y.N. (2006) Lipid-mediated inactivation of colicin E1 channels by calcium ions. Biochemistry-Moscow, 71 (1): 99-103.

  59. Antonenko Y.N., Stoilova T.B., Kovalchuk S.I., Egorova N.S., Pashkovskaya A.A., Sobko A.A., Kotova E.A., Sychev S.V., Surovoy A.Y. (2005) Large unselective pore in lipid bilayer membrane formed by positively charged peptides containing a sequence of gramicidin A. FEBS Letters, 579 (23): 5247-5252.

  60. Novoderezhkin V.I., Andrizhiyevskaya E.G., Dekker J.P., Van Grondelle R. (2005) Pathways and timescales of primary charge separation in the photosystem II reaction center as revealed by a simultaneous fit of time-resolved fluorescence and transient absorption. Biophysical Journal, 89 (3): 1464-1481.

  61. Antonenko Y.N., Kotova E.A., Rokitskaya T.I. (2005) Photodynamic action as a basis for relaxation method of the study of gramicidin channels. Biologicheskie Membrany, 22 (4): 275-289.

  62. Novoderezhkin V.I., Palacios M.A., Van Amerongen H., Van Grondelle R. (2005) Excitation dynamics in the LHCII complex of higher plants: Modeling based on the 2.72 angstrom crystal structure. Journal of Physical Chemistry B, 109 (20): 10493-10504.

  63. Taisova A.S., Lukashev E.P., Keppen O.I., Fetisova Z.G. (2005) A comparative study of the fluorescence properties of the chlorosomal antenna of the green bacterium from the family Oscillochloridaceae and the members from two other families of green bacteria. Biofizika, 50 (2): 271-276.

  64. Sobko A.A., Kotova E.A., Antonenko Y.N., Zakharov S.D., Cramer W.A. (2005) Mechanism of ion pore formation by colicin E1: insight from the dependence of channel activity on lipid bilayer curvature. Biophysical Journal, 88 (1): 248A-248A.

  65. Zakharov S.D., Kotova E.A., Antonenko Y.N., Cramer W.A. (2004) On the role of lipid in colicin pore formation. Biochimica et Biophysica Acta-Biomembranes, 1666 (1): 239-249.

  66. Taisova A.S., Keppen O.I., Fetisova Z.G. (2004) A study of the content of pigments in the light-harvesting antenna of the green bacterium from the new family Oscillochloridaceae. Biofizika, 49 (6): 1069-1074.

  67. Sobko A.A., Kotova E.A., Antonenko Y.N., Zakharov S.D., Cramer W.A. (2004) Effect of lipids with different spontaneous curvature on the channel activity of colicin E1: evidence in favor of a toroidal pore. FEBS Letters, 576 (1): 205-210.

  68. Novoderezhkin V.I., Palacios M.A., Van Amerongen H., Van Grondelle R. (2004) Energy-transfer dynamics in the LHCII complex of higher plants: Modified redfield approach. Journal of Physical Chemistry B, 108 (29): 10363-10375.

  69. Novoderezhkin V.I., Yakovlev A.G., Van Grondelle R., Shuvalov V.A. (2004) Coherent nuclear and electronic dynamics in primary charge separation in photosynthetic reaction centers: A redfield theory approach. Journal of Physical Chemistry B, 108 (22): 7445-7457.

  70. Sobko A.A., Vigasina M.A., Rokitskaya T.I., Kotova E.A., Zakharov S.D., Cramer W.A., Antonenko Y.N. (2004) Chemical and photochemical modification of colicin E1 and gramicidin a in bilayer lipid membranes. Journal of Membrane Biology, 199 (1): 51-62.

  71. Yakovlev A.G., Taisova A.S., Fetisova Z.G. (2004) Survival strategy of photosynthetic organisms. 2. Experimental proof of the size variability of the unit building block of light-harvesting oligomeric antenna. Molecular Biology, 38 (3): 441-446.

  72. Antonenko Y.N., Rokitskaya T.I., Kotova E.A., Reznik G.O., Sano T., Cantor C.R. (2004) Effect of streptavidins with varying biotin binding affinities on the properties of biotinylated gramicidin channels. Biochemistry, 43 (15): 4575-4582.

  73. Mauring K., Novoderezhkin V.I., Taisova A.S., Fetisova Z.G. (2004) The model of pigment aggregation in the chlorosomal antenna of the green bacterium Chloroflexus aurantiacus. Molecular Biology, 38 (2): 266-271.

  74. Antonenko Y.N., Rokitskaya T.I., Kotova E.A., Agapov I.I., Tonevitsky A.G. (2004) Monovalent and multivalent binding of streptavidin to biotinylated gramicidin affects the kinetic properties of the ion channel. Biochemistry-Moscow, 69 (2): 220-227.

  75. Rokitskaya T.I., Kotova E.A., Antonenko Y.N. (2003) Tandem gramicidin channels cross-linked by streptavidin. Journal of General Physiology, 121 (5): 463-476.

  76. Rokitskaya T.I., Kotova E.A., Antonenko Y.N. (2003) Cytochrome c decelerates channel kinetics of negatively charged gramicidin due to electrostatic interaction. Biochemical and Biophysical Research Communications, 302 (4): 865-868.

  77. Krylov A.V., Rokitskaya T.I., Kotova E.A., Yaroslavov A.A., Antonenko Y.N. (2002) Kinetically different populations of O-pyromellityl-gramicidin channels induced by poly-L-lysines in lipid bilayers. Journal of Membrane Biology, 189 (2): 119-130.

  78. Antonenko Y.N., Borisenko V., Melik-nubarov N.S., Kotova E.A., Woolley G.A. (2002) Polyanions decelerate the kinetics of positively charged gramicidin channels as shown by sensitized photoinactivation. Biophysical Journal, 82 (3): 1308-1318.

  79. Yakovlev A.G., Taisova A.S., Fetisova Z.G. (2002) Light control over the size of an antenna unit building block as an efficient strategy for light harvesting in photosynthesis. FEBS Letters, 512 (1): 129-132.

  80. Yakovlev A.G., Novoderezhkin V.I., Taisova A.S., Fetisova Z.G. (2002) Exciton dynamics in the chlorosomal antenna of the green bacterium Chloroflexus aurantiacus: experimental and theoretical studies of femtosecond pump-probe spectra. Photosynth. Res., 71 (1): 19-32. >>

  81. Taisova A.S., Keppen O.I., Lukashev E.P., Arutyunyan A.M., Fetisova Z.G. (2002) Study of the chlorosomal antenna of the green mesophilic filamentous bacterium Oscillochloris trichoides. Photosynth. Res., 74 (1): 73-85. >>

  82. Rokitskaya T.I., Zakharov S.D., Antonenko Y.N., Kotova E.A., Cramer W.A. (2001) Tryptophan-dependent sensitized photoinactivation of colicin E1 channels in bilayer lipid membranes. FEBS Letters, 505 (1): 147-150.

  83. Shapovalov V.L., Rokitskaya T.I., Kotova E.A., Krokhin O.V., Antonenko Y.N. (2001) Effect of fluoride anions on gramicidin photoinactivation sensitized by sulfonated aluminum phthalocyanines. Photochemistry and Photobiology, 74 (1): 1-7.

  84. Taisova A.S., Gulen D., Iseri E.I.,Drachev V.A.,Cherenkova T.A., Fetisova Z.G. (2001) Antenna-size dependent hyperchromism of the Qy absorption band of chlorosomal oligomeric bacteriochlorophyll (BChl) c antennae of green bacteria. Photosynth. Res., 69: 9. >>

  85. Krylov A.V., Kotova E.A., Yaroslavov A.A., Antonenko Y.N. (2000) Stabilization of O-pyromellitylgramicidin channels in bilayer lipid membranes through electrostatic interaction with polylysines of different chain lengths. Biochimica et Biophysica Acta-Biomembranes, 1509 (1): 373-384.

  86. Rokitskaya T.I., Antonenko Y.N., Kotova E.A., Anastasiadis A., Separovic F. (2000) Effect of avidin on channel kinetics of biotinylated gramicidin. Biochemistry, 39 (42): 13053-13058.

  87. Razjivin A.P., Moskalenko A.A., Novoderezhkin V.I. (2000) Model of detergent-induced spectral changes of the B800-850 complex from Chromatium minutissimum. IUBMB Life, 50 (2): 115-117.

  88. Rokitskaya T.I., Block M., Antonenko Y.N., Kotova E.A., Pohl P. (2000) Photosensitizer binding to lipid bilayers as a precondition for the photoinactivation of membrane channels. Biophysical Journal, 78 (5): 2572-2580.

  89. Block M., Rokitskaya T.I., Antonenko Y.N., Kotova E.A., Pohl P. (2000) The potency of different sulfonated aluminium phthalocyanines to sensitize gramicidin channel photoinactivation and their binding to membrane lipids. Biophysical Journal, 78 (1): 175A-175A.

  90. Novoderezhkin V.I., Fetisova Z.G. (1999) Exciton delocalization in the B808-866 antenna of the green bacterium Chloroflexus aurantiacus as revealed by ultrafast pump-probe spectroscopy. Biophysical Journal, 77 (1): 424-430. >>

  91. Kotova E.A., Rokitskaya T.I., Antonenko Y.N. (1999) Two phases of gramicidin photoinactivation in bilayer lipid membranes in the presence of a photosensitizer. Biologicheskie Membrany, 16 (3): 336-343.

  92. Antonenko Y.N., Rokitskaya T.I., Kotova E.A. (1999) Effect of dipole modifiers on the kinetics of sensitized photoinactivation of gramicidin channels in bilayer lipid membranes. Biologicheskie Membrany, 16 (1): 87-94.

  93. Rokitskaya T.I., Antonenko Y.N., Kotova E.A., Zakharov S.D., Cramer W.A. (1999) Sensitized photoinactivation of colicin E1 channels in bilayer lipid membranes. Biophysical Journal, 76 (1): A201-A201.

  94. Krylov A.V., Antonenko Y.N., Kotova E.A., Rokitskaya T.I., Yaroslavov A.A. (1998) Polylysine decelerates kinetics of negatively charged gramicidin channels as shown by sensitized photoinactivation. FEBS Letters, 440 (1): 235-238.

  95. Savikhin S., Buck D.R., Struve W.S., Blankenship R.E., Taisova A.S., Novoderezhkin V.I., Fetisova Z.G. (1998) Excitation delocalization in the bacteriochlorophyll c antenna of the green bacterium Chloroflexus aurantiacus as revealed by ultrafast pump-probe spectroscopy. FEBS Letters, 430 (3): 323-326.

  96. Novoderezhkin V.I., Taisova A.S., Fetisova Z., Blankenship R.E., Savikhin S., Buck D.R., Struve W.S. (1998) Energy transfers in the B808-866 antenna from the green bacterium Chloroflexus aurantiacus. Biophysical Journal, 74 (4): 2069-2075.

  97. Krylov A.V., Antonenko Y.N., Yaroslavov A.A., Rokitskaya T.I., Kotova E.A., Koeppe R.E., Greathouse D.V., Andersen O.S. (1998) Polylysine decelerates channel kinetics of negatively charged gramicidin as shown by sensitized photoinactivation. Biophysical Journal, 74 (2): A387-A387.

  98. Dracheva T.V., Novoderezhkin V.I., Razjivin A.P. (1997) Exciton delocalization in the light-harvesting LH2 complex of photosynthetic purple bacteria. Photochemistry and Photobiology, 66 (5): 605-610.

  99. Timpmann K.E., Taisova A.S., Novoderezhkin V.I., Fetisova Z.G. (1997) Oligomerization of light-harvesting pigments as a structural factor optimizing the photosynthetic antenna function. IV. Functional model of an oligomeric antenna of green bacteria. Molecular Biology, 31 (5): 729-733.

  100. Rokitskaya T.I., Antonenko Y.N., Kotova E.A. (1997) Effect of the dipole potential of a bilayer lipid membrane on gramicidin channel dissociation kinetics. Biophysical Journal, 73 (2): 850-854.

  101. Timpmann K.E., Taisova A.S., Novoderezhkin V.I., Fetisova Z.G. (1997) Functioning of oligomeric-type light-harvesting antenna. Biochemistry and Molecular Biology International, 42 (1): 21-27.

  102. Novoderezhkin V.I., Fetisova Z.G. (1997) Oligomerization of light-harvesting pigments as a structural factor optimizing the photosynthetic antenna function .3. Model of oligomeric pigment organization in antennae of green bacteria. Molecular Biology, 31 (3): 435-440.

  103. Antonenko Y.N., Rokitskaya T.I., Kotova E.A., Koeppe R.E., Andersen O.S. (1997) A study of channel kinetics of gramicidin analogues in planar bilayer membranes by sensitized photoinactivation. Biophysical Journal, 72 (2): TH282-TH282.

  104. Novoderezhkin V.I., Razjivin A.P. (1997) The study of delocalized states in the antenna of purple bacteria by nonlinear spectroscopy. Biofizika, 42 (1): 164-168.

  105. Novoderezhkin V.I., Razjivin A.P. (1996) The theory of Forster-type migration between clusters of strongly interacting molecules: Application to light-harvesting complexes of purple bacteria. Chemical Physics, 211 (1): 203-214.

  106. Novoderezhkin V.I., Fetisova Z.G. (1996) Structure of bacteriochlorophyll aggregates in chlorosomes of green bacteria: A spectral hole burning study. Biochemistry and Molecular Biology International, 40 (2): 243-252.

  107. Dracheva T.V., Novoderezhkin V.I., Razjivin A.P. (1996) Site inhomogeneity and exciton delocalization in the photosynthetic antenna. Photosynthesis Research, 49 (3): 269-276.

  108. Rokitskaya T.I., Antonenko Y.N., Kotova E.A. (1996) Photodynamic inactivation of gramicidin channels: A flash-photolysis study. Biochimica et Biophysica Acta-Bioenergetics, 1275 (3): 221-226.

  109. Mauring K., Taisova A.S., Novoderezhkin V.I., Shibaeva L.V., Fetisova Z.G. (1996) Oligomerization of light-harvesting pigments as a structural factor optimizing the photosynthetic antenna function .2. Experimental proof for oligomeric pigment organization in antennae of green bacteria. Molecular Biology, 30 (2): 265-268.

  110. Rokitskaya T.I., Antonenko Y.N., Kotova E.A. (1996) Photodynamic inactivation of gramicidin channels: A flash-photolysis study. Biophysical Journal, 70 (2): MP127-MP127.

  111. Novoderezhkin V.I., Razjivin A.P. (1995) Theoretical study of circular dichroism of the light-harvesting antenna of photosynthetic purple bacteria: A consideration of exciton interactions and energy disorder. Photochemistry and Photobiology, 62 (6): 1035-1040.

  112. Fetisova Z.G., Shibaeva L.V., Taisova A.S. (1995) Oligomerization of light-harvesting pigments as a structural factor optimizing the photosynthetic antenna function .1. Model calculations. Molecular Biology, 29 (6): 830-833.

  113. Dracheva T.V., Novoderezhkin V.I., Razjivin A.P. (1995) Exciton Theory of Spectra and Energy-Transfer in Photosynthesis - Spectral Hole-Burning in the Antenna of Purple Bacteria. Chemical Physics, 194 (2): 223-235.

  114. Novoderezhkin V.I., Razjivin A.P. (1995) Exciton Dynamics in Circular Aggregates - Application to Antenna of Photosynthetic Purple Bacteria. Biophysical Journal, 68 (3): 1089-1100.

  115. Novoderezhkin V.I., Razjivin A.P. (1995) Spectra and Exciton Dynamics in Circular Aggregates of the Photosynthetic Apparatus. Photosynthetica, 31 (1): 147-151.

  116. Fetisova Z.G., Mauring K., Taisova A.S. (1995) Role of delocalized exciton states of light-harvesting pigments in excitation energy transfer in natural photosynthesis. Proc. SPIE, 2362: 553-560. >>

  117. Novoderezhkin V.I., Fetisova Z.G. (1995) Spectral hole burning as a test for exciton models of chlorosomal antenna. Photosynth. Res., 43: Sup. 1, p. 39.

  118. Novoderezhkin V.I., Razjivin A.P. (1994) Exciton-States of the Antenna and Energy Trapping by the Reaction-Center. Photosynthesis Research, 42 (1): 9-15.

  119. Antonenko Y.N., Kotova E.A., Rokitskaya T.I., Taisova A.S., Borisov A.Y. (1994) A Study of Ion Channels in A Photosynthetic Membrane of Purple Bacteria. Biologicheskie Membrany, 11 (5): 524-528.

  120. Fetisova Z.G., Mauring K., Taisova A.S. (1994) Strongly Exciton-Coupled Bchl-e Chromophore System in the Chlorosomal Antenna of Intact-Cells of the Green Bacterium Chlorobium Phaeovibrioides - A Spectral Hole-Burning Study. Photosynthesis Research, 41 (1): 205-210.

  121. Antonenko Y.N., Rokitskaya T.I., Kotova E.A., Taisova A.S. (1994) Ionic Channel Activity-Induced by Fusion of Rhodospirillum-Rubrum Chromatophores with A Planar Bilayer-Lipid Membrane. FEBS Letters, 337 (1): 77-80.

  122. Novoderezhkin V.I., Razjivin A.P. (1993) Excitonic Interactions in the Light-Harvesting Antenna of Photosynthetic Purple Bacteria and Their Influence on Picosecond Absorbency Difference Spectra. FEBS Letters, 330 (1): 5-7.

  123. Rokitskaya T.I., Antonenko Y.N., Kotova E.A. (1993) The Interaction of Phthalocyanine with Planar Lipid Bilayers - Photodynamic Inactivation of Gramicidin Channels. FEBS Letters, 329 (3): 332-335.

  124. Antonenko Y.N., Kotova E.A., Taisova A.S. (1992) Direct Measurement of Ion Channels in Chromatophore Membranes of Purple Bacteria by Fusion of Vesicles with A Planar Bilayer Lipid-Membrane. Photosynthesis Research, 34 (1): 160.

  125. Kotova E.A. (1990) On the Lifetime of the Bacteriochlorophyll Nanosecond Recombination Luminescence in Purple Bacteria Chromatophores. Biofizika, 35 (2): 285-286.

  126. Kotova E.A., Ladygin V.G., Chikishev A.Y., Borisov A.Y. (1989) Nature of the Nanosecond Chlorophyll Fluorescence in Chlamydomonas-Reinhardii Mutant-Cells. Photosynthetica, 23 (3): 288-293.

  127. Kotova E.A., Oleskin A.V., Samuilov V.D. (1983) Effect of Myxothiazol on the Electrogenic Redox Chain of Purple Photosynthetic Bacteria. Photobiochemistry and Photobiophysics, 6 (4): 211-221.

  128. Denisov S.S., Kotova E.A., Plotnikov E.Y., Tikhonov A.A., Zorov D.B., Korshunova G.A., Antonenko Y.N. (0) A mitochondria-targeted protonophoric uncoupler derived from fluorescein. Chem. Commun., 50 (97): 15366-15369. >>

  129. Ferretti M., Novoderezhkin V.I., Romero E., Augulis R., Pandit A., Zigmantasc D., Van Grondelle R. (0) The nature of coherences in the B820 bacteriochlorophyll dimer revealed by two-dimensional electronic spectroscopy. Phys. Chem. Chem. Phys., 16 (21): 9930-9939. >>

  130. Novoderezhkin V.I., Romero E., Van Grondelle R. (0) How exciton-vibrational coherences control charge separation in the photosystem II reaction center. Phys. Chem. Chem. Phys., 17 (46): 30828-30841. >>

  131. Antonenko Y.N., Gluhov G.S., Firsov A.M., Pogozheva I.D., Kovalchuk S.I., Pechnikova E.V., Kotova E.A., Sokolova O.S. (0) Gramicidin A disassembles large conductive clusters of its lysine-substituted derivatives in lipid membranes. Phys. Chem. Chem. Phys., 17 (26): 17461-17470. >>

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