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  1. Popov Y.V., Galitsyna A.A., Alexeevski A.V., Karyagina A.S., Spirin S.A. (2015) StructAlign, a program for alignment of structures of DNA-protein complexes. Biochem.-Moscow, 80 (11): 1465-1468. >>

  2. Ershova A.S., Rusinov I.S., Spirin S.A., Karyagina A.S., Alexeevski A.V. (2015) Role of restriction-modification systems in prokaryotic evolution and ecology. Biochem.-Moscow, 80 (10): 1373-1386. >>

  3. Konarev P.V., Kachalova G.S., Ryazanova A.Y., Kubareva E.A., Karyagina A.S., Bartunik H.D., Svergun D.I. (2014) Flexibility of the Linker between the Domains of DNA Methyltransferase SsoII Revealed by Small-Angle X-Ray Scattering: Implications for Transcription Regulation in SsoII Restriction-Modification System. PLoS One, 9 (4): . >>

  4. Kirsanov D.D., Zanegina O.N., Aksianov E.A., Spirin S.A., Karyagina A.S., Alexeevski A.V. (2013) NPIDB: nucleic acid-protein interaction database. Nucleic Acids Res., 41: 0-0. >>

  5. Ershova A.S., Karyagina A.S., Vasiliev M.O., Lyashchuk A.M., Lunin V.G., Spirin S.A., Alexeevski A.V. (2012) Solitary restriction endonucleases in prokaryotic genomes. Nucleic Acids Res., 40 (20): 10107-10115. >>

  6. Sharapova N.E., Kotnova A.P., Galushkina Z.M., Lavrova N.V., Poletaeva N.N., Tukhvatulin A.E., Semikhin A.S., Gromov A.V., Soboleva L.A., Ershova A.S., Zaitsev V.V., Sergienko O.V., Lunin V.G., Karyagina A.S. (2010) Production of the recombinant human bone morphogenetic protein-2 in Escherichia coli and testing of its biological activity in vitro and in vivo. Molecular Biology, 44 (6): 923-930.

  7. Velikodvorskaya G.A., Tikhonova T.V., Gurvits I.D., Karyagina A.S., Lavrova N.V., Sergienko O.V., Tashlitskii V.N., Lunina N.A., Lunin V.G. (2010) Chimeric Lactase Capable of Spontaneous and Strong Immobilization on Cellulose and Development of a Continuous-Flow System for Lactose Hydrolysis at High Temperatures. Applied and Environmental Microbiology, 76 (24): 8071-8075.

  8. Ryazanova A.Y., Molochkov N.V., Abrosimova L.A., Alexeevsky A.V., Karyagina A.S., Protsenko A.S., Friedhoff P., Oretskaya T.S., Kubareva E.A. (2010) Secondary structure of SsoII-like (Cytosine-5)-DNA methyltransferases N-terminal region determined by Circular dichroism spectroscopy. Molecular Biology, 44 (5): 807-816.

  9. Nurtdinov R.N., Vasiliev M.O., Ershova A.S., Lossev I.S., Karyagina A.S. (2010) PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays. Nucleic Acids Research, 38: D726-D730.

  10. Karyagina A.S., Alexeevsky A.V., Spirin S.A., Zigangirova N.A., Gintsburg A.L. (2009) Effector proteins of chlamydiae. Molecular Biology, 43 (6): 897-916.

  11. Grishin A.V., Alexeevsky A.V., Spirin S.A., Karyagina A.S. (2009) Conserved structural features of ETS domain-DNA complexes. Molecular Biology, 43 (4): 612-619.

  12. Fedotova E.A., Protsenko A.S., Zakharova M.V., Lavrova N.V., Alekseevsky A.V., Oretskaya T.S., Karyagina A.S., Solonin A.S., Kubareva E.A. (2009) SsoII-like DNA-methyltransferase Ecl18kI: Interaction between regulatory and methylating functions. Biochemistry-Moscow, 74 (1): 85-91.

  13. Romanenkov A.S., Kisil O.V., Zatsepin T.S., Yamskova O.V., Karyagina A.S., Metelev V.G., Oretskaya T.S., Kubareva E.A. (2006) DNA-methyltransferase SsoII as a bifunctional protein: Features of the interaction with the promoter region of SsoII restriction-modification genes. Biochemistry-Moscow, 71 (12): 1341-1349.

  14. Kachalova G.S., Artyukh R.I., Lavrova N.V., Ryazanova E.M., Karyagina A.S., Kubareva E.A., Bartunik H.D. (2005) Crystallization and preliminary crystallographic analysis of the (cytosine-5)-DNA methyltransferase NlaX from Neisseria lactamica. Acta Crystallographica Section F-Structural Biology and Crystallization Communications, 61: 852-854.

  15. Vorob'eva O.V., Romanenkov A.S., Metelev V.G., Karyagina A.S., Lavrova N.V., Oretskaya T.S., Kubareva E.A. (2003) Crosslinking of Cys142 of methyltransferase SsoII with DNA duplexes containing a single internucleotide phosphoryldisulfide link. Molecular Biology, 37 (5): 772-779.

  16. Vorob'eva O.V., Karyagina A.S., Volkov E.M., Viryasov M.B., Oretskaya T.S., Kubareva E.A. (2002) An analysis of methyltransferase SsoII-DNA contacts in the enzyme-substrate complex. Russian Journal of Bioorganic Chemistry, 28 (5): 363-370.

  17. Kubareva E.A., Walter J., Vorob'eva O.V., Razumikhin M.V., Karyagina A.S., Lau P.C.K., Trautner T. (2001) Determination of a non-methylated deoxycytidine residue in the recognition site of DNA-methyltransferases. Biochemistry-Moscow, 66 (12): 1356-1360.

  18. Vorob'eva O.V., Vasil'ev S.A., Karyagina A.S., Oretskaya T.S., Kubareva E.A. (2000) Analysis of DNA-protein contacts in a complex between methyltransferase SsoII and a promoter region of the SsoII restriction-modification genes. Molecular Biology, 34 (6): 921-926.

  19. Kubareva E.A., Thole H., Karyagina A.S., Oretskaya T.S., Pingoud A., Pingoud V. (2000) Identification of a base-specific contact between the restriction endonuclease SsoII and its recognition sequence by photocross-linking. Nucleic Acids Research, 28 (5): 1085-1091.

  20. Kubareva E.A., Kuznetsova S.A., Kanevsky I.A., Karyagina A.S., Nikolskaya I.I., Shabarova Z.A. (1997) DNA dumbbells as substrates for studying of restriction-modification and repair enzymes. FASEB Journal, 11 (9): A1309-A1309.

  21. Sheflyan G.Y., Kubareva E.A., Kuznetsova S.A., Karyagina A.S., Nikolskaya I.I., Gromova E.S., Shabarova Z.A. (1996) Cross-linking of SsoII restriction endonuclease to cognate and non-cognate DNAs. FEBS Letters, 390 (3): 307-310.

  22. Petrauskene O.V., Schmidt S., Karyagina A.S., Nikolskaya I.I., Gromova E.S., Cech D. (1995) The Interaction of DNA Duplexes Containing 2-Aminopurine with Restriction Endonucleases Ecorii and Ssoii. Nucleic Acids Research, 23 (12): 2192-2197.

  23. Brevnov M.G., Kubareva E.A., Romanova E.A., Volkov E.M., Karyagina A.S., Nikolskaya I.I., Gromova E.S. (1995) Interaction of the Mvai and Ssoii Methyltransferases with DNAs Altered at the Central Base-Pair of the Recognition Sequence. Gene, 157 (1): 149-152.

  24. Kubareva E.A., Petrauskene O.V., Karyagina A.S., Tashlitsky V.N., Nikolskaya I.I., Gromova E.S. (1992) Cleavage of Synthetic Substrates Containing Nonnucleotide Inserts by Restriction Endonucleases - Change in the Cleavage Specificity of Endonuclease Ssoii. Nucleic Acids Research, 20 (17): 4533-4538.