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Department of Mathematical methods in biology

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  • Gelfand, Izrael академик РАН, профессор, доктор физико-математических наук, профессор
Recent papers
  1. Rusinov I., Ershova A., Karyagina A., Spirin S., Alexeevski A. (2015) Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes. BMC Genomics, 16: . >>

  2. Popov Y.V., Galitsyna A.A., Alexeevski A.V., Karyagina A.S., Spirin S.A. (2015) StructAlign, a program for alignment of structures of DNA-protein complexes. Biochem.-Moscow, 80 (11): 1465-1468. >>

  3. Goryunov D.V., Nagaev B.E., Nikolaev M.Y., Alexeevski A.V., Troitsky A.V. (2015) Moss phylogeny reconstruction using nucleotide pangenome of complete Mitogenome sequences. Biochem.-Moscow, 80 (11): 1522-1527. >>

  4. Ershova A.S., Rusinov I.S., Spirin S.A., Karyagina A.S., Alexeevski A.V. (2015) Role of restriction-modification systems in prokaryotic evolution and ecology. Biochem.-Moscow, 80 (10): 1373-1386. >>

  5. Prunotto M., Bruschi M., Gunning P., Gabbiani G., Weibel F., Ghiggeri G.M., Petretto A., Scaloni A., Bonello T., Schevzov G., Alieva I., Bochaton-Piallat M.L., Candiano G., Dugina V., Chaponnier C. (2015) Stable incorporation of -smooth muscle actin into stress fibers is dependent on specific tropomyosin isoforms. Cytoskeleton, 72 (6): 257-267. >>

  6. Romaschenko V.P., Zinovkin R.A., Galkin I.I., Zakharova V.V., Panteleeva A.A., Tokarchuk A.V., Lyamzaev K.G., Pletjushkina O.Y., Chernyak B.V., Popova E.N. (2015) Low concentrations of uncouplers of oxidative phosphorylation prevent inflammatory activation of endothelial cells by tumor necrosis factor. Biochem.-Moscow, 80 (5): 610-619. >>

  7. Prikhodko A.S., Shabanov A.K., Zinovkina L.A., Popova E.N., Aznauryan M.A., Lanina N.O., Vitushkina M.V., Zinovkin R.A. (2015) Pure mitochondrial DNA does not activate human neutrophils in vitro. Biochem.-Moscow, 80 (5): 629-635. >>

  8. Manskikh V.N., Gancharova S., Nikiforova I., Krasilshchikova S., Shabalina I.G., Egorov M.V., Karger E.M., Milanovsky G.E., Galkin I.I., Skulachev V.P., Zinovkin R.A. (2015) Age-associated murine cardiac lesions are attenuated by the mitochondria-targeted antioxidant SkQ1. Histol. Histopath., 30 (3): 353-360. >>

  9. Fetisova E.K., Antoschina M.M., Cherepanynets V.D., Izumov D.S., Kireev I.I., Kireev R.I., Lyamzaev K.G., Riabchenko N.I., Chernyak B.V., Skulachev V.P. (2015) Radioprotective Effects of Mitochondria-Targeted Antioxidant SkQR1. Radiat. Res., 183 (1): 64-71. >>

  10. Brett K., Kordyukova L.V., Serebryakova M.V., Mintaev R.R., Alexeevski A.V., Veit M. (2014) Site-specific S-Acylation of Influenza Virus Hemagglutinin THE LOCATION OF THE ACYLATION SITE RELATIVE TO THE MEMBRANE BORDER IS THE DECISIVE FACTOR FOR ATTACHMENT OF STEARATE. J. Biol. Chem., 289 (50): 34978-34989. >>

  11. Lechuga S., Baranwal S., Li C., Naydenov N.G., Kuemmerle J.F., Dugina V., Chaponnier C., Ivanov A.I. (2014) Loss of gamma-cytoplasmic actin triggers myofibroblast transition of human epithelial cells. Mol. Biol. Cell, 25 (20): 3133-3146. >>

  12. Panchin A.Y., Tuzhikov A.I., Panchin Y.V. (2014) Midichlorians - the biomeme hypothesis: is there a microbial component to religious rituals?. Biol. Direct, 9: . >>

  13. Potapova T.V. (2014) Structural and Functional Organization of Growing Tips of Neurospora crassa Hyphae. Biochem.-Moscow, 79 (7): 593-607. >>

  14. Konarev P.V., Kachalova G.S., Ryazanova A.Y., Kubareva E.A., Karyagina A.S., Bartunik H.D., Svergun D.I. (2014) Flexibility of the Linker between the Domains of DNA Methyltransferase SsoII Revealed by Small-Angle X-Ray Scattering: Implications for Transcription Regulation in SsoII Restriction-Modification System. PLoS One, 9 (4): . >>

  15. Krivozubov M., Goebels F., Spirin S. (2014) Estimation of relative effectiveness of phylogenetic programs by machine learning. J. Bioinform. Comput. Biol., 12 (2): . >>

  16. Mintaev R.R., Alexeevski A.V., Kordyukova L.V. (2014) Co-evolution analysis to predict protein-protein interactions within influenza virus envelope. J. Bioinform. Comput. Biol., 12 (2): . >>

  17. Galkin I.I., Pletjushkina O.Y., Zinovkin R.A., Zakharova V.V., Birjukov I.S., Chernyak B.V., Popova E.N. (2014) Mitochondria-targeted antioxidants prevent TNF alpha-induced endothelial cell damage. Biochem.-Moscow, 79 (2): 124-130. >>

  18. Pavlova G.A. (2014) Serotonin Does Not Enhance Locomotor Activity in the Great Pond Snail Lymnaea stagnalis in Winter. J. Evol. Biochem. Physiol., 50 (1): 88-90. >>

  19. Vyssokikh M.Y., Chernyak B.V., Domnina L.V., Esipov D.S., Ivanova O.Y., Korshunova G.A., Symonyan R.A., Skulachev M.V., Zinevich T.V., Skulachev V.P. (2013) SkBQ - Prooxidant addressed to mitochondria. Biochem.-Moscow, 78 (12): 1366-1370. >>

  20. Severina I.I., Severin F.F., Korshunova G.A., Sumbatyan N.V., Ilyasova T.M., Simonyan R.A., Rogov A.G., Trendeleva T.A., Zvyagilskaya R.A., Dugina V.B., Domnina L.V., Fetisova E.K., Lyamzaev K.G., Vyssokikh M.Y., Chernyak B.V., Skulachev M.V., Skulachev V.P., Sadovnichii V.A. (2013) In search of novel highly active mitochondria-targeted antioxidants: Thymoquinone and its cationic derivatives. FEBS Lett., 587 (13): 2018-2024. >>

  21. Arnoldi R., Hiltbrunner A., Dugina V., Tille J.C., Chaponnier C. (2013) Smooth muscle actin isoforms: A tug of war between contraction and compliance. Eur. J. Cell Biol., 92 (6): 187-200. >>

  22. Medvedeva S.A., Panchin A.Y., Alexeevski A.V., Spirin S.A., Panchin Y.V. (2013) Comparative Analysis of Context-Dependent Mutagenesis Using Human and Mouse Models. Biomed Res. Int., 2013: . >>

  23. Medvedeva S.A., Panchin A.Y., Alexeevski A.V., Spirin S.A., Panchin Y.V. (2013) Comparative Analysis of Context-Dependent Mutagenesis in Humans and Fruit Flies. Int. J. Genomics, 2013: . >>

  24. Vasiliev J.M., Samoylov V.I. (2013) Regulatory functions of microtubules. Biochem.-Moscow, 78 (1): 37-40. >>

  25. Arutyunova E.I., Domnina L.V., Chudinova A.A., Makshakova O.N., Arutyunov D.Y., Muronetz V.I. (2013) Localization of non-native D-glyceraldehyde-3-phosphate dehydrogenase in growing and apoptotic HeLa cells. Biochem.-Moscow, 78 (1): 91-95. >>

  26. Kirsanov D.D., Zanegina O.N., Aksianov E.A., Spirin S.A., Karyagina A.S., Alexeevski A.V. (2013) NPIDB: nucleic acid-protein interaction database. Nucleic Acids Res., 41: 0-0. >>

  27. Shagieva G.S., Domnina L.V., Chipysheva T.A., Ermilova V.D., Chaponnier C., Dugina V.B. (2012) Actin isoforms and reorganization of adhesion junctions in epithelial-to-mesenchymal transition of cervical carcinoma cells. Biochem.-Moscow, 77 (11): 1266-1276. >>

  28. Ershova A.S., Karyagina A.S., Vasiliev M.O., Lyashchuk A.M., Lunin V.G., Spirin S.A., Alexeevski A.V. (2012) Solitary restriction endonucleases in prokaryotic genomes. Nucleic Acids Res., 40 (20): 10107-10115. >>

  29. Chernyak B.V., Antonenko Y.N., Galimov E.R., Domnina L.V., Dugina V.B., Zvyagilskaya R.A., Ivanova O.Y., Izyumov D.S., Lyamzaev K.G., Pustovidko A.V., Rokitskaya T.I., Rogov A.G., Severina I.I., Simonyan R.A., Skulachev M.V., Tashlitsky V.N., Titova E.V., Trendeleva T.A., Shagieva G.S. (2012) Novel mitochondria-targeted compounds composed of natural constituents: Conjugates of plant alkaloids berberine and palmatine with plastoquinone. Biochem.-Moscow, 77 (9): 983-995. >>

  30. Sekerina S.A., Grishin A.V., Ryazanova A.Y., Artyukh R.I., Rogulin E.A., Yunusova A.K., Oretskaya T.S., Zheleznaya L.A., Kubareva E.A. (2012) Oligomerization of site-specific nicking endonuclease BspD6I at high protein concentrations. Russ. J. Bioorg. Chem., 38 (4): 376-382. >>

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